Basic Information
VIS ID
TVIS30004957
Fusion event
HIV-STYXL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q11.23
Reference genome
GRCh37/hg19
Start
75647867/76018549 (Hg38)
End
75647867/76018549 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7J
Target gene
STYXL1
Nearest miRNA
hsa-mir-10525/Upstream/103280; hsa-mir-10399/Downstream/16185466;
Nearest TSS
ENST00000635602/Upstream/23890; ENST00000461263/Downstream/10122;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/23703, chr7-CpG: 59/Downstream/29174
Upstream sequence
gcacaaactcggctcactgcaacctctgcctcccaggttcaagtgattctcctacctcagcctccctagtagctgggattacaggcacatgccaccacgc
Downstream sequence
ccagctaatttttgtatttttaatagagatggggtttcaccacattggccaggctggtcttgaactcctgacctcaggtgatcctcccgccttggccttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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