Basic Information
VIS ID
TVIS30004958
Fusion event
HIV-STAG3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99794104/100196481 (Hg38)
End
99794104/100196481 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
STAG3
Nearest miRNA
hsa-mir-10525/Upstream/39812; hsa-mir-10399/Downstream/160170;
Nearest TSS
ENST00000635602/Upstream/15103; ENST00000477469/Downstream/961;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/18521, chr7-CpG: 114/Downstream/74899
Upstream sequence
gcgattcttctgcctcagcctcccaagtagctgggactacaggcgcccaccaccatgcttggctaatttttGGCCACCATGCCCAGCCTGAATGAACTTT
Downstream sequence
CAAAATTGGTTTTTAAAAGAGGTATGGAgaccgggtgcagtggctcacacctgtaaccccagcactttgggaggccaagacaggcagatcacttgaggtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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