Basic Information
VIS ID
TVIS30004970
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
52090211/51177651 (Hg38)
End
52090211/51177651 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/8281376; hsa-mir-10400/Downstream/10537137;
Nearest TSS
ENST00000518652/Upstream/533810; ENST00000521294/Downstream/80037;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1267351, chr8-CpG: 98/Downstream/230951
Nearby gene
PXDNL(No orient, 141926)
Upstream sequence
ataaaggttagccaggcaatgtgatgtgtgcctgtagtcccagttacttaggaagctgaggcatgacaattgctagaacccaggaggcaggagttgcagt
Downstream sequence
gagccaagcttgtgccaccacactccagcctgggtgacagagagagactctgtctcaaaaataaaatataaaaaaaaTTTTAAaaaatggatcatgaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate