VISDB Viral Integration Site DataBase

VIS ID

TVIS30004973

Fusion event

HIV-PDE7A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q13.1

Reference genome

Start

End

66740510/65828275 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-409-3p ; hsa-mir-6807-5p ; hsa-mir-210-5p ; hsa-mir-203a-3p ; hsa-mir-345-3p ; hsa-mir-640 ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-7977 ; hsa-mir-383-3p ; hsa-mir-6871-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-1-5p ; hsa-mir-221-5p ; hsa-mir-3672 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4461 ; hsa-mir-4767 ; hsa-mir-4768-3p ; hsa-mir-4786-5p ; hsa-mir-4793-5p ; hsa-mir-5186 ; hsa-mir-6087 ; hsa-mir-6089 ; hsa-mir-6502-3p ; hsa-mir-6864-3p ; hsa-mir-6888-5p ; hsa-mir-769-5p ; hsa-mir-8073

Nearest miRNA

hsa-mir-124-1/Upstream/1449018; hsa-mir-10400/Downstream/8720268;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/182997, chr8-CpG: 128/Downstream/13079

Upstream sequence

agatggtaaaaattaccagaaatctcactacccaaagataggcactgttaacattatactgaataaccttccagatttggatgttttcacacattgatat

Downstream sequence

ataatatcttccatgattttatccaaaaatacagatgtagaaagcagcattaaatggctgttaaattgacaggcatgccattttgcaactagtttttttc