Basic Information
VIS ID
TVIS30004977
Fusion event
HIV-chr8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
101392917/100380689 (Hg38)
End
101392917/100380689 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/843828; hsa-mir-10400/Downstream/2074;
Nearest TSS
ENST00000518652/Upstream/43094; ENST00000521851/Downstream/15524;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/70203, chr8-CpG: 62/Downstream/178598
Nearby gene
MIR4471(No orient, 2074)
Upstream sequence
ACTTAAAAACATTAAATTTCTTCAAACTGACCATCTTTATACATGTAAAAAGATTTCCTAAAATATTTTTAACTATCTTTACAAATTTAATAACTTTGAC
Downstream sequence
TTTCTCAAACACTTCAAATGCCTGATGGGGCAACATTTACAAACAAAGCAAGAAAAATCCTTCAATATCTCAATGAACTCTTGTAATAATACTAGTTTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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