Basic Information
VIS ID
TVIS30004985
Fusion event
HIV-BOP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145504683/144280650 (Hg38)
End
145504683/144280650 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
BOP1
miRNAs that regulate target gene
hsa-mir-296-3p ; hsa-mir-324-5p
Nearest miRNA
hsa-mir-1204/Upstream/17913; hsa-mir-10400/Downstream/36596;
Nearest TSS
ENST00000518652/Upstream/14090; ENST00000528988/Downstream/10717;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/2385, chr8-CpG: 27/Downstream/5664
Upstream sequence
CTCCTTAAATTATCTGGGAAggccgggcccagtggctcacacctgtcatcccagcactttgggagaccgaggcaggcggatcagttgaggttaagagttc
Downstream sequence
gagaccagactggcctacatggaaaaccctgtctctactaaaaatacaaaaaattagctgggcttggtggcgctcacctgtaatcacagcgggaggctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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