Basic Information
VIS ID
TVIS30004986
Fusion event
HIV-HSF1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
145523402/144299719 (Hg38)
End
145523402/144299719 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA8D
Target gene
HSF1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-let-7c-5p
Nearest miRNA
hsa-mir-1204/Upstream/36982; hsa-mir-10400/Downstream/17527;
Nearest TSS
ENST00000518652/Upstream/7139; ENST00000529630/Downstream/9315;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/7442, chr8-CpG: 158/Downstream/26602
Upstream sequence
TGACTGAGggctgggcgtggtggctcacacctgtaatcccagcactctgggaggccgaggcgggtggatcacgaggtcaggagatcaagaccatcctggc
Downstream sequence
taacatggtgaaaccccgtctctactaaaaatacaaaaaattagccgggcgtggtggcgggcacctgtagtcccagctcctccagaggctgaggcaggag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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