VISDB Viral Integration Site DataBase

VIS ID

TVIS30004990

Fusion event

HIV-ZNF34 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr8

Cytoband

q24.3

Reference genome

Start

End

146009766/144784381 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3162-5p ; hsa-mir-625-5p ; hsa-mir-6878-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-5093 ; hsa-mir-6770-5p ; hsa-mir-3179 ; hsa-mir-4530 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6760-5p ; hsa-mir-3154 ; hsa-mir-634 ; hsa-mir-3646 ; hsa-mir-384 ; hsa-mir-7975 ; hsa-mir-5571-3p ; hsa-mir-4326 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-371b-5p ; hsa-mir-212-5p ; hsa-mir-1224-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-6813-3p ; hsa-mir-6131 ; hsa-mir-215-3p ; hsa-mir-3135b ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-500b-3p ; hsa-mir-5693 ; hsa-mir-6773-3p ; hsa-mir-6812-3p ; hsa-mir-6879-3p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-10400/Upstream/321842; hsa-mir-6850/Downstream/7550;

Nearest TSS

Nearest CpG islands

None/Target, chr8-CpG: 109/Upstream/28532, chr8-CpG: 81/Downstream/2424

Upstream sequence

ggaaaaaagataatggaaGACATCTATGGATATGTTAATATACCTGCAATATTAATGGCAATGAAGAAGGAcaataaatggtattggcacaactggtttt

Downstream sequence

ccattggaaaataaaattagtttcctgccttctgtggtacacaaatatacttcaggcaggttgaagacctaaacattaaaaaaaaaaaaaaaaaAAggtc