Basic Information
VIS ID
TVIS30004993
Fusion event
HIV-FAM27E4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q13
Reference genome
GRCh37/hg19
Start
67790863/61857384 (Hg38)
End
67790863/61857384 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA9F
Target gene
FAM27E4
Nearest miRNA
hsa-mir-101-2/Upstream/20623549; hsa-let-7a-1/Downstream/8952591;
Nearest TSS
ENST00000422679/Upstream/3222; ENST00000421848/Downstream/9581;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/198307, chr9-CpG: 16/Downstream/4510
Nearby gene
FAM27B(No orient, 2066)
Upstream sequence
agcagtggcctgccccacttctaaaggccctggggttccagaaagccgaccacgctttacaccacacctgcaaagaggaaaacaggcgaatccgaggggg
Downstream sequence
agaccatgtgaccacgcgtggcactggccaatcccacagcagttggtgtgaatgcgtctcaccggaggcatacggggcgacggcgaaacaaagggtgggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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