Basic Information
VIS ID
TVIS30004996
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
92134411/89519496 (Hg38)
End
92134411/89519496 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/207190; hsa-let-7a-1/Downstream/503945;
Nearest TSS
ENST00000422679/Upstream/21366; ENST00000494726/Downstream/85517;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/21888, chr9-CpG: 41/Downstream/84422
Nearby gene
SEMA4D(No orient, 39800)
Upstream sequence
agtgtccatccaggtgggtgagtcaccggatggctggcccagtcaagccttctgatgactccagccccactgatatctgactatcaccacatgaaacacc
Downstream sequence
ctatacagcaactcacacagcttagtcctcctcacattcctgaccctacaattgtgaaatgtcatatgatacaatggtgttgtcttaagctactagcttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate