Basic Information
VIS ID
TVIS30004998
Fusion event
HIV-TRIM14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
100880746/98118464 (Hg38)
End
100880746/98118464 (Hg38)
Orient
-
Location type
Intronic
Target gene
TRIM14
miRNAs that regulate target gene
hsa-mir-7-5p ; hsa-mir-320a ; hsa-mir-659-3p ; hsa-mir-450a-1-3p ; hsa-mir-4425 ; hsa-mir-656-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-4668-5p ; hsa-mir-4261 ; hsa-mir-9-5p ; hsa-mir-4640-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-15b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/754783; hsa-mir-12126/Downstream/110685;
Nearest TSS
ENST00000422679/Upstream/30463; ENST00000610463/Downstream/672;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/30354, chr9-CpG: 63/Downstream/352
Upstream sequence
agagccttcctcttgtggcctataaaatggctgtaataataatggctcacccagggctgctatgagcaggaatgggagtgtctgtgTGGCCGGGGAGGGG
Downstream sequence
AGAGGAGGTAGGTAGTGACAGCTGAGGCTGCTCCCAGGGCAGTCAGGCCGTCCTCAGCTCAAAGTTCACAGGCCCTTTCTGTGGACTGCAGATTAAGTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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