Basic Information
VIS ID
TVIS30004999
Fusion event
HIV-ERP44 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
102747441/99985159 (Hg38)
End
102747441/99985159 (Hg38)
Orient
-
Location type
Intronic
Target gene
ERP44
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-30a-5p ; hsa-mir-8081 ; hsa-mir-374a-3p ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-361-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-3617-3p ; hsa-mir-6838-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-4503 ; hsa-mir-5701 ; hsa-mir-27b-5p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-100-3p ; hsa-mir-4795-3p ; hsa-mir-587 ; hsa-mir-584-5p ; hsa-mir-501-5p ; hsa-mir-561-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-552-5p ; hsa-mir-136-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6740-3p ; hsa-mir-942-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-548p
Nearest miRNA
hsa-let-7a-1/Upstream/1755942; hsa-mir-12126/Downstream/6615769;
Nearest TSS
ENST00000422679/Upstream/17889; ENST00000480309/Downstream/113881;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/77968, chr9-CpG: 69/Downstream/113334
Upstream sequence
TCCAGGAATTCTAAAACCAGAGTCAAATAAAATGTAAACTGTTAAAATGGACTTATCTCTATTTTACCAACTTCACAGTATTAAAAAAACTTTTGCTAAC
Downstream sequence
CTATAGTCCCACCATCCTACCACAACTATTGCAGGCCAGGTATGTGTGAAACATTTTTACACAGTTGTAAGCATAGTATCCAGATACTCAGTTTTGTATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate