VISDB Viral Integration Site DataBase

VIS ID

TVIS30005006

Fusion event

HIV-MIGA2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

131810909/129048630 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-555 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-1265 ; hsa-mir-3133 ; hsa-mir-548x-5p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-548aj-5p ; hsa-mir-4773 ; hsa-mir-548aw ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-1468-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181a-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-542-3p ; hsa-mir-876-3p ; hsa-mir-323a-5p ; hsa-mir-6883-5p ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-6134 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4257 ; hsa-mir-9-5p

Nearest miRNA

hsa-let-7a-1/Upstream/655916; hsa-mir-12126/Downstream/820975;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/11629, chr9-CpG: 82/Downstream/32022

Upstream sequence

GTGGCCTCGGTGAGCAGCAGGTGCCAGGGCTCCAGGGCTCCAGGTCCGGGCTTACCCCTGCTGAGGACTCTGCCCTCAGCAAGCTTATAGACTGGTAGAG

Downstream sequence

TCCATTCATTCATTCTCTCTCTCACTCCTCCACCCACGCGGGCTTTCAGGGATTGTCCCTAATCACTCACTGTGCCAGGTGTTGGTGGGAGAAAGGTGGG