VISDB Viral Integration Site DataBase

VIS ID

TVIS30005009

Fusion event

HIV-FNBP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

132794351/130032072 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-128-3p ; hsa-mir-192-5p ; hsa-mir-21-5p ; hsa-mir-615-3p ; hsa-mir-106b-5p ; hsa-mir-25-3p ; hsa-mir-16-5p ; hsa-mir-510-3p ; hsa-mir-580-3p ; hsa-mir-7974 ; hsa-mir-4687-3p ; hsa-mir-494-3p ; hsa-mir-4635 ; hsa-mir-4677-3p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-892b ; hsa-mir-4762-3p ; hsa-mir-183-3p ; hsa-mir-610 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-345-3p ; hsa-mir-563 ; hsa-mir-380-5p ; hsa-mir-4528 ; hsa-mir-8485 ; hsa-mir-6516-5p ; hsa-mir-4459 ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-455-3p ; hsa-mir-4525 ; hsa-mir-5010-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-6499-3p ; hsa-mir-4252 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6087 ; hsa-mir-6852-5p ; hsa-mir-637 ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-1273a ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-8073 ; hsa-mir-371b-5p ; hsa-mir-221-5p ; hsa-mir-4793-5p ; hsa-mir-3613-3p

Nearest miRNA

hsa-let-7a-1/Upstream/162401; hsa-mir-12126/Downstream/209315;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/141636, chr9-CpG: 176/Downstream/9928

Upstream sequence

TTACAATTTTGTTTGGTTTCCTTTTATGTACAAAGTTATAAACACTGAGCACTACCACCACTACTCCTCTTGCCAAAAATGGCCGTAACAAGAACTAAAC

Downstream sequence

CTCTCCTAGAATGACAGGGAGACTTCACACGTACACCTTACTTTTGAAACTGAACAATGTAAATAGCCTATTTTTAAGGATAAGTTAAAATAAACttttt