Basic Information
VIS ID
TVIS30005014
Fusion event
HIV-chr9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139766236/136871784 (Hg38)
End
139766236/136871784 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/40761; hsa-mir-3621/Downstream/14949;
Nearest TSS
ENST00000422679/Upstream/5498; ENST00000414589/Downstream/10128;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/5030, chr9-CpG: 137/Downstream/14170
Nearby gene
EDF1(No orient, 5448)
Upstream sequence
ataattttgtctaatttggaggttatttcaaggttatttccaaatatgaaataagataggaatcagtaagcaggaaagagaaatgtgaagttatggatat
Downstream sequence
gaagatatattttggtaagtaagtttataaaaaagaaatagccaggcatggtggctcatgcatgtaatcccaacactttgggaggccggggcaggcggat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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