Basic Information
VIS ID
TVIS30005019
Fusion event
HIV-BCLAF3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p22.12
Reference genome
GRCh37/hg19
Start
19949618/19931500 (Hg38)
End
19949618/19931500 (Hg38)
Orient
+
Location type
Intronic
Target gene
BCLAF3
miRNAs that regulate target gene
hsa-mir-4482-3p ; hsa-mir-6883-3p ; hsa-mir-4795-3p ; hsa-mir-454-5p ; hsa-mir-3938 ; hsa-mir-126-5p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1281 ; hsa-mir-6777-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-3180-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-502-5p ; hsa-mir-6868-3p ; hsa-mir-103a-2-5p ; hsa-mir-4711-5p ; hsa-mir-7112-3p ; hsa-mir-4778-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p
Nearest miRNA
hsa-mir-3690-1/Upstream/2505546; hsa-let-7f-2/Downstream/85588;
Nearest TSS
ENST00000429181/Upstream/1602; ENST00000424026/Downstream/4076;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/43061, chrX-CpG: 99/Downstream/58903
Upstream sequence
AGATGGAGTCTATCTCTGCCCTGATAAATCTTAAAAACTTAGCTACTTGCCAACTTACTGGAAGAAGCTGCATTAAGCTCTTGACTATGAAAAGGATTTC
Downstream sequence
TCCCCCAAAATCATTCAATTAAATTCTCCTATAGAAAATAAACATGAAGCCATATGAAGAAAAACCCTGGGCTGAACGAAACTTTTAACAAGACCAGTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate