VISDB Viral Integration Site DataBase

VIS ID

TVIS30005020

Fusion event

HIV-RPS6KA3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.12

Reference genome

Start

End

20232626/20214508 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-1296-5p ; hsa-mir-503-5p ; hsa-mir-320a ; hsa-mir-29a-3p ; hsa-mir-1273e ; hsa-mir-218-5p ; hsa-mir-5195-3p ; hsa-mir-145-5p ; hsa-mir-4724-3p ; hsa-mir-636 ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-5696 ; hsa-mir-9-3p ; hsa-mir-4722-5p ; hsa-mir-1253 ; hsa-mir-4729 ; hsa-mir-6165 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-6856-5p ; hsa-mir-5197-3p ; hsa-mir-6758-5p ; hsa-mir-518f-3p ; hsa-mir-518d-3p ; hsa-mir-518c-3p ; hsa-mir-518b ; hsa-mir-518a-3p ; hsa-mir-526b-5p ; hsa-mir-6868-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4524a-3p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-1911-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-191-5p

Nearest miRNA

hsa-mir-23c/Upstream/197321; hsa-let-7f-2/Downstream/8281047;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/72343, chrX-CpG: 197/Downstream/51501

Upstream sequence

ccaaattccagaagaaaaataatcttggctcagaactttgacaccatagatccattgccttctagcatccagttctgctgatgagatgggtgatgctagt

Downstream sequence

ctagtcacactttttggtaggtctggtttttccttctggaagctttaaagattttctctgtccttgtgtttctgaaattccccaatagtgagataaatag