Basic Information
VIS ID
TVIS30005021
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
39193836/39334582 (Hg38)
End
39193836/39334582 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/1310596; hsa-let-7f-2/Downstream/326634;
Nearest TSS
ENST00000429181/Upstream/7220; ENST00000447651/Downstream/57192;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/171704, chrX-CpG: 36/Downstream/278961
Nearby gene
LINC01281(No orient, 7220)
Upstream sequence
CACCCAGAAAGTCAGGGTGGGCTTGAACAACAGGCAGGAAGCTGGGATGCCATCCCAGTTTCTGTTCTAAGTGTTTCTGCCCTGGCCCCCTGAAACTAGA
Downstream sequence
ACACCACCAGCTGAAACCTTCGTTTTGGCTCTTTGTATCGGCAAAGAACTCTAACACATTTTTCTATTCAGAATCAGAGCCATCTAGTTCTGTGTTTCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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