Basic Information
VIS ID
TVIS30005023
Fusion event
HIV-chrX integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
42794877/42935628 (Hg38)
End
42794877/42935628 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105373188 ; LOC107985717
Nearest miRNA
hsa-mir-1587/Upstream/3098015; hsa-let-7f-2/Downstream/2810529;
Nearest TSS
ENST00000429181/Upstream/157381; ENST00000440955/Downstream/241366;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/157372, chrX-CpG: 54/Downstream/719154
Nearby gene
PPP1R2C(No orient, 157391)
Upstream sequence
AGTCAAACAAGACTTTTATTTCAAAAACACTTTCTTCTATTAAATCTTTGAATGCATTTTTCCATCTTTTCTGTTCTTTTCTTTCATCTGAATTCCATAT
Downstream sequence
CTAATGATCTTTTTATAATTTTATATCTCATTCATTTTAATTCTCATTTTGTGTAATTTTTTTGAAGTTTCACTTCCATGTCACTGATTGTGGCATCAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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