Basic Information
VIS ID
TVIS30005025
Fusion event
HIV-UBA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.3
Reference genome
GRCh37/hg19
Start
47068945/47209546 (Hg38)
End
47068945/47209546 (Hg38)
Orient
+
Location type
Intronic
Target gene
UBA1
miRNAs that regulate target gene
hsa-mir-1254 ; hsa-mir-1301-3p ; hsa-mir-744-5p ; hsa-mir-615-3p ; hsa-mir-324-5p ; hsa-mir-331-3p ; hsa-mir-27b-3p ; hsa-mir-222-3p ; hsa-mir-210-3p ; hsa-mir-182-5p ; hsa-mir-17-3p ; hsa-let-7b-5p ; hsa-mir-6834-5p ; hsa-mir-4278 ; hsa-mir-5010-5p ; hsa-mir-5187-5p ; hsa-mir-4525 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-1272 ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p
Nearest miRNA
hsa-mir-1587/Upstream/1462422; hsa-let-7f-2/Downstream/377883;
Nearest TSS
ENST00000429181/Upstream/984; ENST00000517479/Downstream/8314;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/15340, chrX-CpG: 92/Downstream/8218
Upstream sequence
cctggccTGGTTTTTCAATTGAGGTGGGGGAATGGGGAAGGCTAGAGGGCTTCCCCACTTCCAGAGTAGCTGTGCGCCTTGTACTTGCTTTATTCACTGA
Downstream sequence
TGGTCCTTCTAATAATGCCTGCGGAAACCCATTTTGTCAACTGTGGCCACATGTAATCTGTTTGCTCTGTCTGCAGTGGGCTCGGGATGAGTTTGAAGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate