Basic Information
VIS ID
TVIS30005027
Fusion event
HIV-KIF4A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
69521301/70301451 (Hg38)
End
69521301/70301451 (Hg38)
Orient
+
Location type
Intronic
Target gene
KIF4A
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-26b-5p ; hsa-mir-222-3p
Nearest miRNA
hsa-let-7f-2/Upstream/278528; hsa-mir-105-1/Downstream/3916926;
Nearest TSS
ENST00000429181/Upstream/10937; ENST00000472623/Downstream/121580;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/11339, chrX-CpG: 81/Downstream/132406
Upstream sequence
cacctcagaggctccaagagattcaacttgtataagttctccaaggtaaatacagtactaagcctggggtcctgttttcctggcttcctaatccagtgGA
Downstream sequence
AACTGTACCATGCTATTTCCTCTAGTGAAAATGAGGTTAAAAATGAATCAGAGGTACAGAGAGGAGCATGGGGTCAGATAGGGGTGAAAGTAACAAAGAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate