Basic Information
VIS ID
TVIS30005033
Fusion event
HIV-MPP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154025094/154796819 (Hg38)
End
154025094/154796819 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRAXE ; FRAXF
Target gene
MPP1
miRNAs that regulate target gene
hsa-mir-15b-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-let-7f-2/Upstream/28163; hsa-mir-1184-1/Downstream/90541;
Nearest TSS
ENST00000429181/Upstream/4397; ENST00000620016/Downstream/2996;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/33263, chrX-CpG: 61/Downstream/8272
Upstream sequence
CAGCACCATGACAATATTAAGGTACACATGTCCATGATAGGAAGTTGGCAGGTAAAAAGGGGAGAAAAATCGAAAGGAAGAGGCCTGTAATCTTGTTCTG
Downstream sequence
TTACAAAGTGGGGAGTCAAGAAGTAGGATCTGCATTGGTTGGACAATAAATGAAGGAGTGAATGCATTACATAAAGTTCCAagccaggtgtggtggcatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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