Basic Information
VIS ID
TVIS30005036
Fusion event
HIV-C1orf159 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.33
Reference genome
GRCh37/hg19
Start
1047651/1112271 (Hg38)
End
1047651/1112271 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
C1orf159
miRNAs that regulate target gene
hsa-mir-218-5p
Nearest miRNA
hsa-mir-12136/Upstream/479586; hsa-mir-101-1/Downstream/54833;
Nearest TSS
ENST00000473358/Upstream/6144; ENST00000416774/Downstream/3810;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1311, chr1-CpG: 186/Downstream/2864
Upstream sequence
gggaaagacaggctcccaatagctagaaaacacatgaaatccggtgatgggcagcttcccgatacgatctcaggaactgggcgagttggctcaagcgtgt
Downstream sequence
gcactgagaggcaaaatggcggcgtgtaaccgttctatgaccttctagggacgtttgacaggtaacggaagaacgcctcaggtgagcatgggcactactc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate