VISDB Viral Integration Site DataBase

VIS ID

TVIS30005041

Fusion event

HIV-GNB1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.33

Reference genome

Start

End

1716787/1785348 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-103a-3p ; hsa-mir-101-3p ; hsa-mir-16-5p ; hsa-mir-589-3p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-218-5p ; hsa-mir-493-3p ; hsa-mir-3064-3p ; hsa-mir-3138 ; hsa-mir-1227-3p ; hsa-mir-891a-5p ; hsa-mir-4795-5p ; hsa-mir-6838-5p ; hsa-mir-6501-3p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-2278 ; hsa-mir-582-5p ; hsa-mir-889-3p ; hsa-mir-324-5p ; hsa-mir-302a-5p ; hsa-mir-1277-5p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-5692a ; hsa-mir-4520-3p ; hsa-mir-874-5p ; hsa-mir-4533 ; hsa-mir-1252-5p ; hsa-mir-6125 ; hsa-mir-3120-3p ; hsa-mir-1287-5p ; hsa-mir-2392 ; hsa-mir-3135b ; hsa-mir-3907 ; hsa-mir-3928-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4524b-3p ; hsa-mir-4768-3p ; hsa-mir-766-5p

Nearest miRNA

hsa-mir-12136/Upstream/445640; hsa-mir-101-1/Downstream/1342627;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/2646, chr1-CpG: 199/Downstream/104618

Upstream sequence

ACTGGAAGTGGACCCGTAAATAATCACCACACCAAAGTCCCTCATGTCAAACTGCTTTATTACATCTTAAATAACAGTACAGTTTAATATAGTATCTATC

Downstream sequence

TTGCATCCAGCTTCCTTGCAGTACACTGACTTTAAAATTAAATACAAAAGGTGGAAAGGGGTAAGGGTGCAGAGAGCTCTACAGAGTTGTTGGACGGAAA