Basic Information
VIS ID
TVIS30005050
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.32
Reference genome
GRCh37/hg19
Start
3403501/3486937 (Hg38)
End
3403501/3486937 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/358902; hsa-mir-101-1/Downstream/73758;
Nearest TSS
ENST00000473358/Upstream/14168; ENST00000606489/Downstream/309;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8310, chr1-CpG: 18/Downstream/13505
Nearby gene
MEGF6(No orient, 1005)
Upstream sequence
agggaatgcatatacactgttggtgggaatgtgaactcacttagcctgtatggaaaatgttatggtttttctcaaagaactaaaaatggaactcccattc
Downstream sequence
catccagcaatcacaccacagggcacctgcacaaatgaaaggaattcattatatcaaaaagatgctcacacttatgtgtttatcacagcactgttcacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate