Basic Information
VIS ID
TVIS30005054
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.31
Reference genome
GRCh37/hg19
Start
6471908/6411848 (Hg38)
End
6471908/6411848 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/549107; hsa-mir-101-1/Downstream/17986;
Nearest TSS
ENST00000473358/Upstream/17457; ENST00000633651/Downstream/4783;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17723, chr1-CpG: 177/Downstream/7149
Nearby gene
HES2(No orient, 3386)
Upstream sequence
Gttttttattttgatagtaaaatacacataacataaaattaaccatcttggtcgggcatggtacctcagacctgtaatcccagcactttgggaggctgag
Downstream sequence
gtgggtggatcacctgaggtcaggagtttgagaccagcctggccaatatggtgaaaccccaactctaataaaaatacaaaaattagccgggtgtgatagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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