VISDB Viral Integration Site DataBase

VIS ID

TVIS30005055

Fusion event

HIV-KLHL21 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.31

Reference genome

Start

End

6658818/6598758 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-130b-3p ; hsa-mir-26b-5p ; hsa-mir-19b-3p ; hsa-mir-30b-3p ; hsa-mir-149-3p ; hsa-mir-887-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4728-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-1273h-5p ; hsa-mir-218-5p ; hsa-mir-4697-3p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-139-3p ; hsa-mir-2277-3p ; hsa-mir-4302 ; hsa-mir-6733-3p ; hsa-mir-6856-3p ; hsa-mir-641 ; hsa-mir-7161-5p ; hsa-mir-3617-5p ; hsa-mir-548u ; hsa-mir-4639-5p ; hsa-mir-542-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-4686 ; hsa-mir-4645-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-4475 ; hsa-mir-519a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302a-3p ; hsa-mir-4713-5p ; hsa-mir-7111-3p ; hsa-mir-6852-3p ; hsa-mir-3909 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-4761-5p ; hsa-mir-6513-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6807-5p ; hsa-mir-6799-5p ; hsa-mir-4663 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-383-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-7106-5p ; hsa-mir-6811-3p ; hsa-mir-6847-3p ; hsa-mir-214-5p ; hsa-mir-4755-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-1254 ; hsa-mir-1271-3p ; hsa-mir-3116 ; hsa-mir-4666b ; hsa-mir-4685-5p ; hsa-mir-4709-5p ; hsa-mir-513a-5p ; hsa-mir-550a-3-5p ; hsa-mir-550a-5p ; hsa-mir-5581-3p ; hsa-mir-5587-5p ; hsa-mir-6124 ; hsa-mir-661 ; hsa-mir-671-5p ; hsa-mir-6804-5p ; hsa-mir-6837-5p ; hsa-mir-6872-3p ; hsa-mir-6882-3p ; hsa-mir-7113-5p

Nearest miRNA

hsa-mir-12136/Upstream/168862; hsa-mir-101-1/Downstream/2267744;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/5144, chr1-CpG: 27/Downstream/307

Upstream sequence

gatcatgaggtcaggagatcaagaccatcctggctaacacggtgaaaccccgtctctacaaaaaatacaaaaaaattagccaggcatggtggtgggcgcc

Downstream sequence

tgtagtcccagctactctggaggctgaggcaggagaatggcgtgaacccggaaggtggagcttgcagtgagctgagattgcgccacagcactccagcctg