Basic Information
VIS ID
TVIS30005056
Fusion event
HIV-CAMTA1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.31
Reference genome
GRCh37/hg19
Start
6874494/6814434 (Hg38)
End
6874494/6814434 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
CAMTA1
miRNAs that regulate target gene
hsa-mir-129-5p ; hsa-mir-155-5p ; hsa-mir-218-5p ; hsa-mir-34a-5p ; hsa-mir-96-5p ; hsa-mir-124-3p ; hsa-mir-17-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p
Nearest miRNA
hsa-mir-12136/Upstream/384538; hsa-mir-101-1/Downstream/2052068;
Nearest TSS
ENST00000473358/Upstream/7446; ENST00000472283/Downstream/10676;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/28128, chr1-CpG: 23/Downstream/147507
Nearest cancer related gene
CAMTA1(TSG, No orient, 0)
Upstream sequence
ttccagtcccccttggaatcgtgaccaaattctagccagtggggtgagagcaacgaagtgtgccacttccagacttggcccctgaaactcttgaggcatg
Downstream sequence
ggtatcatgccttttccttatctggcttgatgcagagggcctagtgacctagaaagtcttctgccacaaggtagaaggagcacaggcagcagagccactg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate