Basic Information
VIS ID
TVIS30005059
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.23
Reference genome
GRCh37/hg19
Start
8347039/8286979 (Hg38)
End
8347039/8286979 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/1857083; hsa-mir-101-1/Downstream/579523;
Nearest TSS
ENST00000473358/Upstream/66450; ENST00000481265/Downstream/30847;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/69217, chr1-CpG: 61/Downstream/30745
Nearby gene
SLC45A1(No orient, 31106)
Upstream sequence
cccaactgaacatagaaattcaatatacaattaagttgacatctcaaaccagtgggaaaattttaatacatggtattaagatacccagaaggctacaaag
Downstream sequence
aaatacaaaattgagtccattctttttttttttttttgagacggcgtctcactctgttgccaggctggagtgcagtggtgcgatattggctcactacaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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