VISDB Viral Integration Site DataBase

VIS ID

TVIS30005071

Fusion event

HIV-SLC25A33 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

9620490/9560432 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-92a-3p ; hsa-mir-1304-5p ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-610 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6794-3p ; hsa-mir-4294 ; hsa-mir-1289 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-1304-3p ; hsa-mir-4639-3p ; hsa-mir-6514-5p ; hsa-mir-5698 ; hsa-mir-7108-5p ; hsa-mir-663b ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-566 ; hsa-mir-7155-3p ; hsa-mir-6789-3p ; hsa-mir-3136-3p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-134-3p ; hsa-mir-7114-5p ; hsa-mir-6787-3p ; hsa-mir-5693 ; hsa-mir-6736-3p ; hsa-mir-3115 ; hsa-mir-6741-5p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-2276-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-4279 ; hsa-mir-5089-5p ; hsa-mir-5001-3p ; hsa-mir-1268b ; hsa-mir-1268a ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4677-5p ; hsa-mir-943 ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-6716-5p ; hsa-mir-26b-3p

Nearest miRNA

hsa-mir-12136/Upstream/408655; hsa-mir-101-1/Downstream/406949;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/20047, chr1-CpG: 119/Downstream/28242

Upstream sequence

ggcgggcggatcacgaggtcaggagatagagactatcctggctaacacggtgaaaccctatctctactaaaaatacaaaaaattagccaggtgtggcggt

Downstream sequence

gggcgcctgtaatcccggctactcgggaggttgaggcaggagaatggcatgaaccccggaggcggaggttgcagtgagccgagatcgtgccactgcactc