VISDB Viral Integration Site DataBase

VIS ID

TVIS30005075

Fusion event

HIV-CLSTN1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.22

Reference genome

Start

End

9861355/9801297 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-455-3p ; hsa-mir-423-5p ; hsa-mir-30e-3p ; hsa-mir-30a-3p ; hsa-mir-218-5p ; hsa-mir-6763-5p ; hsa-mir-6825-5p ; hsa-mir-3150a-3p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-7154-3p ; hsa-mir-6077 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-4751 ; hsa-mir-7155-5p ; hsa-mir-637 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-941 ; hsa-mir-3175 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3937 ; hsa-mir-383-3p

Nearest miRNA

hsa-mir-12136/Upstream/649520; hsa-mir-101-1/Downstream/166084;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/38538, chr1-CpG: 188/Downstream/21656

Upstream sequence

tcgtgccattgcactccagcctgggaaacaagagcgaaactccatctcaaaagtaaataaataagaaatattatgaacaactctatgcctaaaaatttga

Downstream sequence

taacctagatgaaatttatcaattccctggaagatacaatctgccaaaactcacccaagaaaaagcaaacaatctaaatagacctgtatctcttagagaa