Basic Information
VIS ID
TVIS30005083
Fusion event
HIV-PEX14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
GRCh37/hg19
Start
10657488/10597431 (Hg38)
End
10657488/10597431 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1A
Target gene
PEX14
miRNAs that regulate target gene
hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-let-7a-5p ; hsa-mir-3157-5p ; hsa-mir-330-3p ; hsa-mir-4293
Nearest miRNA
hsa-mir-12136/Upstream/629973; hsa-mir-101-1/Downstream/1431727;
Nearest TSS
ENST00000473358/Upstream/61543; ENST00000606802/Downstream/41332;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/122316, chr1-CpG: 173/Downstream/40811
Upstream sequence
TTAAAACAATGTCTTTCCCACCAGGGCTCCGAAAGGGGTTCCCCTTCCTGTTTAGTCGGAGCGATCGGCAGTCACTACACAGGCTGGAACCTGAGAGGCA
Downstream sequence
CAAACTCAGGGCGGGGGTATTCTCTGTTGTTGCCTGGCTTGCCTGTTGGTCCTGTCCCTGTTCTTCTTGGAAGGTGAAATTATGGGTAAAGCAGTCCCTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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