Basic Information
VIS ID
TVIS30005094
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
GRCh37/hg19
Start
12576400/12516348 (Hg38)
End
12576400/12516348 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/324575; hsa-mir-101-1/Downstream/62609;
Nearest TSS
ENST00000473358/Upstream/19122; ENST00000416696/Downstream/11376;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/285206, chr1-CpG: 18/Downstream/23973
Nearby gene
VPS13D(No orient, 4302)
Upstream sequence
tatttttaatagagatggggtttcactgtgttagccaggatggtcttgatctcctgacctcatgatccacccacctcggcctcccaaagtgctgggatta
Downstream sequence
caggcgtgagccactgcacctgacttttgtttaagagacaaggtcttgctttgtcacccaggctggagtgcagcggtatgatcatagctccctgtagtct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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