Basic Information
VIS ID
TVIS30005098
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
GRCh37/hg19
Start
16077316/15750821 (Hg38)
End
16077316/15750821 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/3171798; hsa-mir-101-1/Downstream/1108128;
Nearest TSS
ENST00000473358/Upstream/925; ENST00000510929/Downstream/5786;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3795, chr1-CpG: 99/Downstream/7755
Nearby gene
TMEM82(No orient, 3024)
Upstream sequence
caggaggctgaggcaggagaatcgcttgaacccgggaggcggaggttgtagtgagtcgagattgtcgcactgcactccagcccgggcaacagagtgagac
Downstream sequence
tctgtctcaaaacaaactaacaaagaaacaaagaaaaGTAAAGCCGGGTCAGGGGACAGAGTGACGGGGGCAGAAGTGAGAGAAGGtgtatttgttatct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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