Basic Information
VIS ID
TVIS30005099
Fusion event
HIV-MIR5096 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.21
Reference genome
GRCh37/hg19
Start
16199869/15873374 (Hg38)
End
16199869/15873374 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1A
Target gene
MIR5096
Nearest miRNA
hsa-mir-12136/Upstream/3294351; hsa-mir-101-1/Downstream/985575;
Nearest TSS
ENST00000473358/Upstream/25227; ENST00000471538/Downstream/128;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/23752, chr1-CpG: 22/Downstream/61001
Upstream sequence
ATTTATATCCCAATGGCTGGTATCTTATGGAATCGTAGAGGATATTTCCTGCAGCTGATTGGATATCTGTTCCTGAGATATAATGTGATGGAAGATTTCC
Downstream sequence
TATGGAAGCTTCATTTTTGGAGTTACCTGTCTTCTAGAATTACTTATTCCTTCTCTTGGATAATGTTAAGTCCTTCCTTGGATATATCCCTTCTACCTGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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