VISDB Viral Integration Site DataBase

VIS ID

TVIS30005113

Fusion event

HIV-ECE1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.12

Reference genome

Start

End

21591309/21264816 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-484 ; hsa-mir-3679-3p ; hsa-mir-488-3p ; hsa-mir-2355-5p ; hsa-mir-4635 ; hsa-mir-6793-3p ; hsa-mir-1277-5p ; hsa-mir-4422 ; hsa-mir-1296-3p ; hsa-mir-149-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-194-3p ; hsa-mir-2110 ; hsa-mir-2467-3p ; hsa-mir-3153 ; hsa-mir-3197 ; hsa-mir-3612 ; hsa-mir-3652 ; hsa-mir-4270 ; hsa-mir-4271 ; hsa-mir-4419a ; hsa-mir-4430 ; hsa-mir-4441 ; hsa-mir-4481 ; hsa-mir-4505 ; hsa-mir-4510 ; hsa-mir-4649-3p ; hsa-mir-4687-3p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4728-5p ; hsa-mir-4745-5p ; hsa-mir-4787-5p ; hsa-mir-491-5p ; hsa-mir-5094 ; hsa-mir-513a-5p ; hsa-mir-551b-5p ; hsa-mir-5693 ; hsa-mir-5698 ; hsa-mir-5787 ; hsa-mir-6077 ; hsa-mir-6087 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6754-5p ; hsa-mir-6765-5p ; hsa-mir-6780b-5p ; hsa-mir-6785-5p ; hsa-mir-6825-5p ; hsa-mir-6842-3p ; hsa-mir-6870-5p ; hsa-mir-6873-5p ; hsa-mir-6883-5p ; hsa-mir-7111-5p ; hsa-mir-7114-5p ; hsa-mir-7153-3p ; hsa-mir-7974 ; hsa-mir-889-5p ; hsa-mir-122-5p ; hsa-mir-143-5p ; hsa-mir-215-3p ; hsa-mir-3135b ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-6722-5p ; hsa-mir-6773-3p ; hsa-mir-6879-3p ; hsa-mir-1197 ; hsa-mir-198 ; hsa-mir-214-5p ; hsa-mir-3657 ; hsa-mir-4669 ; hsa-mir-6514-3p ; hsa-mir-6747-3p ; hsa-mir-6811-3p ; hsa-mir-6849-3p

Nearest miRNA

hsa-mir-12136/Upstream/276384; hsa-mir-101-1/Downstream/1001423;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/39378, chr1-CpG: 73/Downstream/25071

Upstream sequence

TTTACTCTGTGTatacagactaagaatagcaacagacatccagagtacctgtggcattaacatttcatggaggCGTAATGATAACTGCAGGCTGAGAAAT

Downstream sequence

GCCACCCTGGGTGACGGGGTCTGCGCTCCCACCTGTCTCCAgctcctgccccacactcttccccatggctggctggtctcttctctccttaactcaagca