VISDB Viral Integration Site DataBase

VIS ID

TVIS30005116

Fusion event

HIV-LUZP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.12

Reference genome

Start

End

23486525/23160032 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-122-5p ; hsa-mir-103a-3p ; hsa-mir-93-5p ; hsa-mir-615-3p ; hsa-mir-185-5p ; hsa-let-7e-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-296-5p ; hsa-mir-6780a-3p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-526b-5p ; hsa-mir-516b-5p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-6894-5p ; hsa-mir-7154-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-924 ; hsa-mir-518c-5p ; hsa-mir-1264 ; hsa-mir-1296-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6828-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-4512 ; hsa-mir-7160-3p ; hsa-mir-6165 ; hsa-mir-6895-5p ; hsa-mir-873-5p ; hsa-mir-4303 ; hsa-mir-6751-3p ; hsa-mir-1199-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-8067 ; hsa-mir-6508-5p ; hsa-mir-648 ; hsa-mir-595 ; hsa-mir-1253 ; hsa-mir-1286 ; hsa-mir-211-3p ; hsa-mir-2467-3p ; hsa-mir-3138 ; hsa-mir-3151-5p ; hsa-mir-3166 ; hsa-mir-3190-3p ; hsa-mir-3616-3p ; hsa-mir-4251 ; hsa-mir-4257 ; hsa-mir-4306 ; hsa-mir-4428 ; hsa-mir-4436b-3p ; hsa-mir-4450 ; hsa-mir-4468 ; hsa-mir-4491 ; hsa-mir-4520-3p ; hsa-mir-4632-5p ; hsa-mir-4636 ; hsa-mir-4644 ; hsa-mir-4657 ; hsa-mir-4711-5p ; hsa-mir-4722-5p ; hsa-mir-4764-5p ; hsa-mir-4800-5p ; hsa-mir-486-3p ; hsa-mir-491-5p ; hsa-mir-6077 ; hsa-mir-6081 ; hsa-mir-6134 ; hsa-mir-6721-5p ; hsa-mir-6735-5p ; hsa-mir-6758-5p ; hsa-mir-6770-5p ; hsa-mir-6847-5p ; hsa-mir-6856-5p ; hsa-mir-6857-5p ; hsa-mir-6879-5p ; hsa-mir-7-5p ; hsa-mir-7843-5p ; hsa-mir-7845-5p ; hsa-mir-8071 ; hsa-mir-8085 ; hsa-mir-92a-2-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-1305 ; hsa-mir-2355-5p ; hsa-mir-300 ; hsa-mir-3607-5p ; hsa-mir-381-3p ; hsa-mir-4666a-3p ; hsa-mir-627-3p ; hsa-mir-7849-3p ; hsa-mir-98-3p

Nearest miRNA

hsa-mir-12136/Upstream/115660; hsa-mir-101-1/Downstream/769038;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/139848, chr1-CpG: 92/Downstream/7714

Upstream sequence

ccaagatcacgccactgcactccagcatgggcaacaagggtaaaattccgtctcaaaaaacaaaaacaaaaacaaaCCAATTACTACATTACCCTGTAAT

Downstream sequence

ATTCTGATGTAGTTTCATCAGAAAAGCCAAAATAATCACTGATTTAAAATACACAGTAGGTACCTCCTAAAAACTAATTTAAATTTACCACTTAATTTGA