Basic Information
VIS ID
TVIS30005117
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
23581238/23254745 (Hg38)
End
23581238/23254745 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/210373; hsa-mir-101-1/Downstream/674325;
Nearest TSS
ENST00000473358/Upstream/60016; ENST00000641772/Downstream/30709;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/37001, chr1-CpG: 127/Downstream/89007
Nearby gene
LINC01355(No orient, 26564)
Upstream sequence
GTGTTGTAAAACTGCTGCTAAGTACTGGGAGACTCAGAAGAGCAGAATATGGACCTTCTAGCTGGGAGCATCCTACAGATTTGTACGGATTGATTGAGGA
Downstream sequence
ACAAGACCAAGTAGTAGAGGGCAATTACTCAGCATTTTGGCAGAGATGAGCAGCTCCTAAATCAGTGCTTGTGGTGCCCTTCCCCATCTTTCAACTTCAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate