VISDB Viral Integration Site DataBase

VIS ID

TVIS30005119

Fusion event

HIV-CLIC4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

25098320/24771829 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-122-5p ; hsa-mir-10a-3p ; hsa-mir-130b-3p ; hsa-mir-26a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-106a-3p ; hsa-mir-139-5p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-1323 ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-548o-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-4476 ; hsa-mir-4742-5p ; hsa-mir-4772-5p ; hsa-mir-6876-5p ; hsa-mir-665 ; hsa-mir-374a-5p ; hsa-mir-577 ; hsa-mir-504-3p ; hsa-mir-561-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-6880-5p ; hsa-mir-4799-5p ; hsa-mir-4796-3p ; hsa-mir-3163 ; hsa-mir-1273e ; hsa-mir-3915 ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-580-3p ; hsa-mir-526b-5p ; hsa-mir-3928-3p ; hsa-mir-539-5p ; hsa-mir-493-3p ; hsa-mir-6515-3p ; hsa-mir-1236-3p ; hsa-mir-3662 ; hsa-mir-101-3p ; hsa-mir-3941 ; hsa-mir-545-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-383-5p ; hsa-mir-144-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-4764-3p ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-508-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3165 ; hsa-mir-8071 ; hsa-mir-520f-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6800-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4290 ; hsa-mir-4264 ; hsa-mir-1910-5p ; hsa-mir-455-3p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p

Nearest miRNA

hsa-mir-12136/Upstream/842682; hsa-mir-101-1/Downstream/147516;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/25734, chr1-CpG: 86/Downstream/76240

Upstream sequence

ACTTGAGACATGTAATTGGGGTTTTGTAACTAGCTACTCACTATATAGCTATTGGTCTAAACCTAACAGATTGGTTTAGAGAACTAGAATATTATGTAAC

Downstream sequence

TGGAAGGCCAGGTTCAAGTCCTATGTGTATCCTAATTGATCTGCTACCTCATCTGTCAAGTGGGTGTATTTCTTGGAGGTGATGTTCAGTCCAGTTTGTA