VISDB Viral Integration Site DataBase

VIS ID

TVIS30005124

Fusion event

HIV-PDIK1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

26448037/26121546 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-590-3p ; hsa-mir-221-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-18a-5p ; hsa-mir-22-3p ; hsa-mir-187-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-4420 ; hsa-mir-3662 ; hsa-mir-3646 ; hsa-mir-4711-5p ; hsa-mir-570-3p ; hsa-mir-152-3p ; hsa-mir-148b-3p ; hsa-mir-148a-3p ; hsa-mir-4698 ; hsa-mir-5094 ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-6071 ; hsa-mir-4795-5p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-6728-3p ; hsa-mir-4716-5p ; hsa-mir-599 ; hsa-mir-3161 ; hsa-mir-548v ; hsa-mir-338-5p ; hsa-mir-222-3p ; hsa-mir-197-3p ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-4733-3p ; hsa-mir-1226-3p

Nearest miRNA

hsa-mir-12136/Upstream/215092; hsa-mir-101-1/Downstream/432996;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/9120, chr1-CpG: 84/Downstream/39770

Upstream sequence

ATTGAGGTTTATACCCCAGCTGGCAATTTCCTAGGTCTATCTGCTGAAACTTTGGTCTTTTCATGAAGCTATGAGCTAGCTGGGTAGAGTTCAGCTCCAC

Downstream sequence

TGACACATGGAGAAAATGTGTGGCCACTTGGACGCTTTTCAAAATAAAGCTATTTTAAAATTTTTACCCCTTGGTTTAGAGCTTTGGTGTATATTTATCA