Basic Information
VIS ID
TVIS30005126
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.11
Reference genome
GRCh37/hg19
Start
26540460/26213969 (Hg38)
End
26540460/26213969 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/307515; hsa-mir-101-1/Downstream/340573;
Nearest TSS
ENST00000473358/Upstream/23341; ENST00000480446/Downstream/20184;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/43636, chr1-CpG: 50/Downstream/11057
Nearby gene
LOC101928303(No orient, 11351)
Upstream sequence
aagcgatcctcccgccttgggctcccaaagtTAACttttttttttttttttttttttttttttaagacggagtcttgctctgtcgccctggctggagtgc
Downstream sequence
agtggtgcaatctcggctcactgcaagctctgcctcccgggttcacgccattctcctgcctcagcctctctgagtagctgggactacaggcgcccaccac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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