VISDB Viral Integration Site DataBase

VIS ID

TVIS30005134

Fusion event

HIV-WDTC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

27565148/27238657 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-148a-3p ; hsa-mir-298 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-8085 ; hsa-mir-5196-5p ; hsa-mir-6731-5p ; hsa-mir-4747-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4533 ; hsa-mir-6828-5p ; hsa-mir-6794-5p ; hsa-mir-6760-5p ; hsa-mir-4716-3p ; hsa-mir-6510-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-1277-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1193 ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-2467-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-3150b-3p ; hsa-mir-3188 ; hsa-mir-339-3p ; hsa-mir-3681-3p ; hsa-mir-370-5p ; hsa-mir-3929 ; hsa-mir-3975 ; hsa-mir-4316 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4689 ; hsa-mir-4784 ; hsa-mir-485-5p ; hsa-mir-6858-5p ; hsa-mir-6884-5p ; hsa-mir-7160-5p

Nearest miRNA

hsa-mir-12136/Upstream/684064; hsa-mir-101-1/Downstream/3500499;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/3534, chr1-CpG: 63/Downstream/83305

Upstream sequence

caacctctgcctcccaggttcaagtgattcccatgcctcacttcatcttccaggctggagtgcagtggcatgatctcggctcactgcaacctctgcctcc

Downstream sequence

caggttcaagtgattctcatgcctcagcctcccaagtagctggaattataggcatgtaccaccacgcccatctaatttttgtatttttgtagagatgggg