Basic Information
VIS ID
TVIS30005142
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
28566339/28239828 (Hg38)
End
28566339/28239828 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/1685235; hsa-mir-101-1/Downstream/2499328;
Nearest TSS
ENST00000473358/Upstream/3674; ENST00000605846/Downstream/1625;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3363, chr1-CpG: 27/Downstream/7362
Nearby gene
ATP5IF1(No orient, 1723)
Upstream sequence
TAAAGGTGTACCATAggctgggtgcgatggctcatgcctgtaatcccagcactttgagaggccgaggcaggcggatcatctgaggtcaggagttcaagac
Downstream sequence
cagcctggctaacatggcaaaaccccatctctactaaaaatacaaaaattagccatgtgtggtgttgggcacctgtaatccccgctactcgggaggctga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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