VISDB Viral Integration Site DataBase

VIS ID

TVIS30005143

Fusion event

HIV-MED18 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.3

Reference genome

Start

End

28656656/28330145 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-532-3p ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-6866-5p ; hsa-mir-877-5p ; hsa-mir-4731-5p ; hsa-mir-5589-5p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-328-3p ; hsa-mir-191-3p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-106a-3p ; hsa-mir-3191-5p ; hsa-mir-1229-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-3663-5p ; hsa-mir-7152-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6862-3p ; hsa-mir-6784-3p ; hsa-mir-6511b-3p ; hsa-mir-6511a-3p ; hsa-mir-500b-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p

Nearest miRNA

hsa-mir-12136/Upstream/1775552; hsa-mir-101-1/Downstream/2409011;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/989, chr1-CpG: 61/Downstream/39385

Upstream sequence

agtatcacctgaggccaggagttcgaggccaacctggccaacatgacgaaaccccgtctctactaaaaatacaaaaaaaattagctgggcttggttgcgg

Downstream sequence

gcgcctgtaatcccagctactcgggaggctgagacaggagaatcgcttgaacctgggaggcagaggctgcagtgaacagagattgcgccattgcactcca