Basic Information
VIS ID
TVIS30005144
Fusion event
HIV-TAF12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.3
Reference genome
GRCh37/hg19
Start
28944968/28618456 (Hg38)
End
28944968/28618456 (Hg38)
Orient
-
Location type
Intronic
Target gene
TAF12
miRNAs that regulate target gene
hsa-mir-92b-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-6878-5p ; hsa-mir-4271 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-4668-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3202 ; hsa-mir-7515 ; hsa-mir-6124 ; hsa-mir-6783-5p ; hsa-mir-6760-5p ; hsa-mir-5584-5p ; hsa-mir-548k ; hsa-mir-8054 ; hsa-mir-548av-5p
Nearest miRNA
hsa-mir-12136/Upstream/2063863; hsa-mir-101-1/Downstream/2120700;
Nearest TSS
ENST00000473358/Upstream/426; ENST00000420776/Downstream/24549;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/25514, chr1-CpG: 38/Downstream/24585
Upstream sequence
TGCCTTTAGACAAGtttgtttttttgttttgttttgtttttgagacagggtcttgctctattgcccactggagtgcagtggcatgatcatggcttactgt
Downstream sequence
agccttgactgccaagctctcccacctaagcttcccagctagctgggaccataggcacgtgccatcatacctggctaatttttttttttttttttttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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