Basic Information
VIS ID
TVIS30005152
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32244411/31778810 (Hg38)
End
32244411/31778810 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/20075; hsa-mir-101-1/Downstream/308139;
Nearest TSS
ENST00000473358/Upstream/13917; ENST00000527035/Downstream/10320;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5750, chr1-CpG: 28/Downstream/9593
Nearby gene
SPOCD1(No orient, 11612)
Upstream sequence
GGGGGGCTGCTACTCTATCTCAAGGCCCATCGCTCACATTAATTACCGAGAAAAAGCCAATTTCTCCTCATTTCCAGACTCCAAATGACAGTATCATTAG
Downstream sequence
GCTAGTAATGTGCGGAGAAATTGTGCGTGTCTGTCTTGGAATATGTCCTGAGCCAGAATGGATGAGGGCGCCCCCAGCAGGGGTTTGTCTCCAAGACACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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