Basic Information
VIS ID
TVIS30005154
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32371775/31906174 (Hg38)
End
32371775/31906174 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/147439; hsa-mir-101-1/Downstream/180775;
Nearest TSS
ENST00000473358/Upstream/50606; ENST00000447478/Downstream/5106;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/116767, chr1-CpG: 82/Downstream/31507
Nearby gene
PTP4A2(No orient, 247)
Nearest cancer related gene
PTP4A2(OG, No orient, 247)
Upstream sequence
ttgggacagggtgtctgtcaccaaggctggagtatagtggcatgatcacagctcactacagcctcaacctcttgggctcaagtgttcctctcacctcagc
Downstream sequence
ctcccaagtagctgagactgcaagcacacaccaccatgcccagctaattattaaacattttttttttgtagagatggactcaacacattacccaggctgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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