VISDB Viral Integration Site DataBase

VIS ID

TVIS30005157

Fusion event

HIV-KPNA6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.2

Reference genome

Start

End

32593229/32127628 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-mir-877-3p ; hsa-mir-615-3p ; hsa-mir-378a-3p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-92a-3p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-3646 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3125 ; hsa-mir-3185 ; hsa-mir-3916 ; hsa-mir-6077 ; hsa-mir-6859-5p ; hsa-mir-3688-3p ; hsa-mir-6807-5p ; hsa-mir-381-3p ; hsa-mir-655-3p ; hsa-mir-300 ; hsa-mir-374c-5p ; hsa-mir-619-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4699-5p ; hsa-mir-1292-3p ; hsa-mir-4438 ; hsa-mir-1468-3p ; hsa-mir-6750-3p ; hsa-mir-5692a ; hsa-mir-1293 ; hsa-mir-4531 ; hsa-mir-516b-5p ; hsa-mir-7107-3p ; hsa-mir-6753-3p ; hsa-mir-4527 ; hsa-mir-6503-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-1253 ; hsa-mir-641 ; hsa-mir-3617-5p ; hsa-mir-1252-3p ; hsa-mir-7-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-5006-5p ; hsa-mir-6868-3p ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-4755-3p ; hsa-mir-627-3p ; hsa-mir-3124-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-3927-5p ; hsa-mir-4279 ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-532-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-662 ; hsa-mir-133a-3p ; hsa-mir-133b ; hsa-mir-1915-3p ; hsa-mir-198 ; hsa-mir-323a-5p ; hsa-mir-4281 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-6840-3p ; hsa-mir-876-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-150-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-6504-3p ; hsa-mir-93-5p

Nearest miRNA

hsa-mir-12136/Upstream/40621; hsa-mir-101-1/Downstream/1204765;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/18911, chr1-CpG: 65/Downstream/51925

Upstream sequence

CTAAGAGCTAAAAGGAAGAGCTAATCAGAGGGATTTTTATAATTCAGCTGACAGACAATGCAGAACCCTCTTTGTCTGAAGACGAGTTGTGGGTGGAGGG

Downstream sequence

TACTGCAGAATAGAGGCCAGGTAACCAGCCGTTTTGCTATTCTATCTCAGAGGCATTTTGCTGTGTGGACCTTTGTTTTTATGCCTCTTTAACTGAACTG