VISDB Viral Integration Site DataBase

VIS ID

TVIS30005160

Fusion event

HIV-ZBTB8A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33027836/32562235 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-130b-3p ; hsa-mir-103a-3p ; hsa-mir-21-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-1304-5p ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-6879-3p ; hsa-mir-6880-5p ; hsa-mir-4294 ; hsa-mir-1289 ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-6812-3p ; hsa-mir-500b-3p ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6722-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-4520-2-3p ; hsa-mir-4520-3p ; hsa-mir-7703 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-4538 ; hsa-mir-4267 ; hsa-mir-4453 ; hsa-mir-508-5p ; hsa-mir-5093 ; hsa-mir-4708-3p ; hsa-mir-3188 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-2467-5p ; hsa-mir-3975 ; hsa-mir-2276-3p ; hsa-mir-1252-3p ; hsa-mir-4635 ; hsa-mir-6798-5p ; hsa-mir-6783-5p ; hsa-mir-10a-5p ; hsa-mir-10b-5p ; hsa-mir-1288-5p ; hsa-mir-3190-5p ; hsa-mir-339-5p ; hsa-mir-3926 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4684-5p ; hsa-mir-4768-3p ; hsa-mir-4786-5p ; hsa-mir-548c-3p ; hsa-mir-548s ; hsa-mir-593-3p ; hsa-mir-6732-3p ; hsa-mir-6818-3p ; hsa-mir-6849-3p ; hsa-mir-6895-3p ; hsa-mir-143-5p ; hsa-mir-4534 ; hsa-mir-5698 ; hsa-mir-6499-3p ; hsa-mir-6514-5p ; hsa-mir-8082

Nearest miRNA

hsa-mir-12136/Upstream/475228; hsa-mir-101-1/Downstream/770158;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/22097, chr1-CpG: 96/Downstream/88707

Upstream sequence

tgtagaaacggggtctcactatgttgctcaggctggtcttgaactcctgggctcaaacaatccttctacctcagtctcctaaagtgttgggagtataggc

Downstream sequence

atgagccaccctgcccagccCCTGAGCTATTTTTTAAAATTAttttttgagatggagttttgctcttgttgccttgcccaggctggggtgccatggtgtg