VISDB Viral Integration Site DataBase

VIS ID

TVIS30005161

Fusion event

HIV-RBBP4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

p35.1

Reference genome

Start

End

33123089/32657488 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-3p ; hsa-mir-423-3p ; hsa-mir-324-5p ; hsa-let-7e-5p ; hsa-mir-429 ; hsa-mir-6868-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-4766-3p ; hsa-mir-4252 ; hsa-mir-6734-3p ; hsa-mir-3667-3p ; hsa-mir-3908 ; hsa-mir-205-5p ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-1183 ; hsa-mir-500a-5p ; hsa-mir-8070 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-6759-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-6767-3p ; hsa-mir-5092 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-342-3p ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-1228-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-744-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-431-5p ; hsa-mir-4294 ; hsa-mir-3194-3p ; hsa-mir-924 ; hsa-mir-367-5p ; hsa-mir-1267

Nearest miRNA

hsa-mir-12136/Upstream/570481; hsa-mir-101-1/Downstream/674905;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/5726, chr1-CpG: 86/Downstream/44930

Upstream sequence

TTACTAATTTGAACAGTGACTATATATTGCCGTTACAGACCAGAAGGGAAAGATTTCAGCATTCATCGACTTGTCCTGGGGACACACACATCGGATGAAC

Downstream sequence

AAAACCATCTTGTTATAGCCAGTGTGCAGCTCCCTAATGATGATGCTCAGTTTGATGCGTCACACTACGACAGTGAGAAAGGAGGTAGGAATCTTAAAGG